SBIR-STTR Award

Ototoxicity of modified aminoglycosides
Award last edited on: 2/16/2024

Sponsored Program
SBIR
Awarding Agency
NIH : NIAID
Total Award Amount
$1,989,206
Award Phase
2
Solicitation Topic Code
855
Principal Investigator
Sandra Paige Story

Company Information

Nubad LLC

900 B West Faris Road
Greenville, SC 29605
   (864) 455-1463
   info@nubadllc.com
   www.nubadllc.com
Location: Single
Congr. District: 04
County: Greenville

Phase I

Contract Number: 1R44AI172739-01
Start Date: 7/11/2022    Completed: 6/30/2025
Phase I year
2022
Phase I Amount
$989,230
Aminoglycosides are one of the cheapest and well-known antibiotics in clinical use for over 70 years, but one of the major limitations in their use is their ototoxicity. Although new generations of antibiotics have emerged in the last decades, aminoglycoside antibiotics maintain a leading role in treatment of acute infections and for specific indications such as tuberculosis or the containment of pseudomonas bacteria in patients with cystic fibrosis. Owing to their broad antibacterial spectrum and efficacy against resistant bacterial diseases, aminoglycoside antibiotics continue to be indispensable. However, their use has been limited due to side effects. The major side effects accompanying aminoglycoside treatment are nephrotoxicity and ototoxicity, including cochlear damage and vestibular disorders. Nephrotoxicity affects about 20% of patients and is usually reversible, while ototoxicity is irreversible. It is estimated that cochlear damage occurs in 20% and vestibular disorders in 15% of those receiving aminoglycoside antibiotics, but the incidence increases markedly to 80% in long-term treatment for tuberculosis. The pathological feature of aminoglycoside-induced ototoxicity is loss of mechanosensory hair cells in the inner ear. Hair cell loss begins at the base of the cochlea and proceeds toward the apex. Hair cells are specialized mechanoreceptors that convert auditory and vestibular mechanical stimuli into electrical signals. These cells are responsible for the detection of sound and equilibrium. Since mammalian hair cells lack the ability to regenerate, the loss of or damage to hair cells is the leading cause of permanent hearing impairments and vestibular disorders. Although a series of biological events and cell death pathways are known to be involved in aminoglycoside-induced hair cell death, no established clinical therapies for prevention or amelioration of this disability are available. Aminoglycoside-induced ototoxicity reduces the quality of life of millions of affected individuals and confers a great economic cost. Therefore, development of new efficacious synthetic aminoglycoside derivatives, but without the problematic side effects, will provide a fundamental approach to prevent ototoxicity. Since the ototoxicity potential and organ preference varies among the different aminoglycoside antibiotics, small changes in structure may greatly influence toxicity, providing great possibility to find new aminoglycoside derivatives. We are developing fast and low-cost methods to develop aminoglycosides with broad spectrum anti-infective activities, but with reduced ototoxicity. In this project, we will identify novel aminoglycoside based anti-infectives, that show reduced ototoxicity. This work addresses an important health issue, anti-infective drug ototoxicity, and presents creative steps towards a novel solution to this problem. Unless innovative strategies are developed to produce robust and effective new classes of non-toxic antibiotics, health care costs will continue to climb and we will completely lose our ability to combat even the most common infection. One of the challenges of research in drug development is to find ways to use the increasing knowledge of the mechanisms underlying disease biology, and toxicities, along with disease transformation and progression to develop novel therapeutic strategies for MDR, XDR, and PDR infections. One of the biggest bottlenecks in the advancement of drugs to the clinic and eventual limitation in the clinical usage, is the toxicity of the drug. This problem becomes even more acute when the drugs have to be used for extended periods of time (months), such as for fungal infections in immunocompromised patients. We have therefore focused our efforts in identifying the toxicity pathways for individual drug classes, such as aminoglycosides, and addressed these issues at the very outset. Since aminoglycoside-induced hair cell loss in explants is similar to that in humans, we will first use mouse organ culture for a secondary screening of the top compounds without toxicity. We will then use pigmented guinea pigs to evaluate auditory function by measurement of auditory brainstem responses, count loss of sensory hair cell loss, and assess renal function with serum for the top compounds. The results of this project will help us identify novel aminoglycosides with high efficacy against microbes of interest, but with reduced toxicity. The work proposed here, a multidisciplinary effort using rapid methods of synthesis, inhibition, and ototoxicity assays, will be further developed in this Phase II application using in vivo efficacy and ototoxicity studies using guinea pig models. We propose using novel aminoglycoside modifications, patented NUBAD assays, mouse organ culture studies, guinea pigs, to identify conjugates that show reduced ototoxicities, opening possibilities for developing drugs that can target resistant pathogens, but with much improved therapeutic indices.

Public Health Relevance Statement:
The work proposed here, a multidisciplinary effort to improve the therapeutic index of a well-established class of drugs-the aminoglycosides. We propose to reduce their ototoxicity, while simultaneously improving the anti- infective effects. In vitro and in vivo ototoxicity studies will be used to optimize the development of a new class of small molecules developed by NUBAD as non-toxic therapeutics. The success of the proposed work would be a significant addition to currently available classes of aminoglycosides in broad spectrum drug development. Using our preliminary data, we propose using our promising leads to develop and optimize a small library of small molecules that can be employed to inhibit microbial growth but with significantly lower ototoxicities, opening possibilities for development of therapeutics with improved therapeutic profiles over existing clinical standard of care drugs. The proposed research describes such a strategy for improving the therapeutic index of aminoglycosides by designing novel structures that lower their ototoxicities.

Project Terms:
absorption; Affect; Aminoglycosides; inhibitor; Anti-Infective Agents; Anti-Infective Drugs; Anti-Infectives; Anti-infective Preparation; AntiInfective Drugs; AntiInfectives; Antiinfective Agents; communicable disease control agent; Antibiotics; Antibiotic Agents; Antibiotic Drugs; Miscellaneous Antibiotic; Aminoglycoside Antibiotics; Aminoglycoside Agents; Aminoglycoside Drugs; Antifungal Agents; Antifungal Drug; Therapeutic Fungicides; anti-fungal; anti-fungal agents; anti-fungal drug; antifungals; Bacteria; Bacterial Infections; bacteria infection; bacterial disease; Biological Assay; Assay; Bioassay; Biologic Assays; Biological Availability; Bioavailability; Biologic Availability; Physiologic Availability; Biology; Candida; Monilia; Candidiasis; Candidosis; Moniliasis; Cell Death; necrocytosis; Cell Wall; Cells; Cell Body; Chemistry; Cochlea; Cochlear Organ; Containment; Disease; Disorder; Drug toxicity; Pharmaceutical Preparations; Drugs; Medication; Pharmaceutic Preparations; drug/agent; Equilibrium; balance; balance function; Feedback; Growth; Generalized Growth; Tissue Growth; ontogeny; Hair Cells; Corti Cell; ear hair cell; Health; Human; Modern Man; In Vitro; Incidence; Infection; Labyrinth; Internal Ear; inner ear; Lead; Pb element; heavy metal Pb; heavy metal lead; Lethal Dose 50; LD-50; LD50; Libraries; Lipids; Liver; hepatic body system; hepatic organ system; Mechanoreceptors; Metabolism; Intermediary Metabolism; Metabolic Processes; Methods; Mus; Mice; Mice Mammals; Murine; Mycoses; Fungus Diseases; fungal infection; fungus infection; NIH; National Institutes of Health; United States National Institutes of Health; Organ Culture; in vitro Organ Culturing; in vitro vertebrate organ culturing; Organ Culture Techniques; Patents; Legal patent; Patients; Esteroproteases; Peptidases; Protease Gene; Proteases; Proteinases; Proteolytic Enzymes; Peptide Hydrolases; Pharmacokinetics; Drug Kinetics; Pigments; Chrysemonas; Flavimonas; Pseudomonas; QOL; Quality of life; Regeneration; regenerate; Natural regeneration; Research; social role; Role; Cell Communication and Signaling; Cell Signaling; Intracellular Communication and Signaling; Signal Transduction Systems; Signaling; biological signal transduction; Signal Transduction; sound; South Carolina; Testing; Time; Tobramycin; Tobrex; Tuberculosis; M tuberculosis infection; M. tb infection; M. tuberculosis infection; M.tb infection; M.tuberculosis infection; MTB infection; Mycobacterium tuberculosis (MTB) infection; Mycobacterium tuberculosis infection; TB infection; disseminated TB; disseminated tuberculosis; infection due to Mycobacterium tuberculosis; tuberculosis infection; tuberculous spondyloarthropathy; Universities; Work; Generations; Microbial Biofilms; biofilm; Immunocompromised Host; Immunocompromised; Immunocompromised Patient; Immunosuppressed Host; immunosuppressed patient; Health Care Costs; Health Costs; Healthcare Costs; Auditory Brainstem Responses; Cavia; Guinea Pigs; Guinea Pigs Mammals; bacterial resistance; Bacteria resistance; Bacteria resistant; Bacterial resistant; resistance to Bacteria; resistance to Bacterial; resistant to Bacteria; resistant to Bacterial; base; method development; Organ; improved; Acute; Solid; Clinical; Phase; Biological; biologic; Medical; Series; Nosocomial Infections; Hospital Infections; Hospital acquired infection; institutional infection; excretion; Excretory function; Blood Serum; Serum; Sensory Hair; disability; kidney function; Renal function; drug induced hearing impairment; drug induced hearing loss; ototoxic; ototoxicity; Individual; Measurement; Antibacterial Agents; anti-bacterial; antibacterial; Anti-Bacterial Agents; Therapeutic; Metabolic; Knowledge; Minimum Inhibitory Concentrations; Minimum Inhibitory Concentration measurement; Auditory; Event; Clinic; Protocol; Protocols documentation; Risk-Benefit Assessment; interest; meetings; preference; success; chemical library; small molecule libraries; synergism; microbial; Nephrotoxic; kidney toxicity; nephrotoxicity; Toxicities; Toxic effect; Structure; Therapeutic Index; novel; economic cost; Drug Interactions; Pharmacodynamics; Modeling; drug development; rapid method; rapid technique; Fungal Drug Resistance; Antifungal Drug Resistance; Antifungal Drug Resistant; Antifungal resistant; Fungus drug resistant; anti-fungal drug resistance; anti-fungal drug resistant; anti-fungal resistance; anti-fungal resistant; antifungal resistance; fungus drug resistance; resistance to anti-fungal; resistance to antifungal; resistant to anti-fungal; resistant to antifungal; RNA bound; RNA Binding; preventing; prevent; small molecule; Hearing Loss; Hypoacuses; Hypoacusis; dysfunctional hearing; hearing defect; hearing deficit; hearing difficulty; hearing disability; hearing dysfunction; hearing impairment; Address; Dose; Data; Detection; NIAID; National Institute of Allergy and Infectious Disease; in vivo; Pathologic; Modification; follow-up; Active Follow-up; active followup; follow up; followed up; followup; Development; developmental; Pathway interactions; pathway; pre-clinical; preclinical; cost; design; designing; Biodistribution; Resistance profile; Resistant profile; Prevention therapy; pathogen; cystic fibrosis patients; CF patients; individuals with CF; individuals with cystic fibrosis; patients with CF; patients with cystic fibrosis; Population; innovation; innovate; innovative; Resistance; resistant; Microbe; multidisciplinary; novel therapeutics; new drug treatments; new drugs; new therapeutics; new therapy; next generation therapeutics; novel drug treatments; novel drugs; novel therapy; mouse model; murine model; aminoglycoside-induced ototoxicity; aminoglycoside ototoxicity; tuberculosis treatment; TB therapy; TB treatment; tuberculosis therapy; therapeutic development; therapeutic agent development; combat; novel therapeutic intervention; new therapeutic approach; new therapeutic intervention; new therapeutic strategies; new therapy approaches; novel therapeutic approach; novel therapeutic strategies; novel therapy approach; standard of care; preclinical toxicity; pre-clinical toxicity; screening; efficacy study; screening program; acute infection; side effect; Rapid screening; guinea pig model; mechanical stimulus

Phase II

Contract Number: 5R44AI172739-02
Start Date: 7/11/2022    Completed: 6/30/2025
Phase II year
2023
Phase II Amount
$999,976
Aminoglycosides are one of the cheapest and well-known antibiotics in clinical use for over 70 years, but one of the major limitations in their use is their ototoxicity. Although new generations of antibiotics have emerged in the last decades, aminoglycoside antibiotics maintain a leading role in treatment of acute infections and for specific indications such as tuberculosis or the containment of pseudomonas bacteria in patients with cystic fibrosis. Owing to their broad antibacterial spectrum and efficacy against resistant bacterial diseases, aminoglycoside antibiotics continue to be indispensable. However, their use has been limited due to side effects. The major side effects accompanying aminoglycoside treatment are nephrotoxicity and ototoxicity, including cochlear damage and vestibular disorders. Nephrotoxicity affects about 20% of patients and is usually reversible, while ototoxicity is irreversible. It is estimated that cochlear damage occurs in 20% and vestibular disorders in 15% of those receiving aminoglycoside antibiotics, but the incidence increases markedly to 80% in long-term treatment for tuberculosis. The pathological feature of aminoglycoside-induced ototoxicity is loss of mechanosensory hair cells in the inner ear. Hair cell loss begins at the base of the cochlea and proceeds toward the apex. Hair cells are specialized mechanoreceptors that convert auditory and vestibular mechanical stimuli into electrical signals. These cells are responsible for the detection of sound and equilibrium. Since mammalian hair cells lack the ability to regenerate, the loss of or damage to hair cells is the leading cause of permanent hearing impairments and vestibular disorders. Although a series of biological events and cell death pathways are known to be involved in aminoglycoside-induced hair cell death, no established clinical therapies for prevention or amelioration of this disability are available. Aminoglycoside-induced ototoxicity reduces the quality of life of millions of affected individuals and confers a great economic cost. Therefore, development of new efficacious synthetic aminoglycoside derivatives, but without the problematic side effects, will provide a fundamental approach to prevent ototoxicity. Since the ototoxicity potential and organ preference varies among the different aminoglycoside antibiotics, small changes in structure may greatly influence toxicity, providing great possibility to find new aminoglycoside derivatives. We are developing fast and low-cost methods to develop aminoglycosides with broad spectrum anti-infective activities, but with reduced ototoxicity. In this project, we will identify novel aminoglycoside based anti-infectives, that show reduced ototoxicity. This work addresses an important health issue, anti-infective drug ototoxicity, and presents creative steps towards a novel solution to this problem. Unless innovative strategies are developed to produce robust and effective new classes of non-toxic antibiotics, health care costs will continue to climb and we will completely lose our ability to combat even the most common infection. One of the challenges of research in drug development is to find ways to use the increasing knowledge of the mechanisms underlying disease biology, and toxicities, along with disease transformation and progression to develop novel therapeutic strategies for MDR, XDR, and PDR infections. One of the biggest bottlenecks in the advancement of drugs to the clinic and eventual limitation in the clinical usage, is the toxicity of the drug. This problem becomes even more acute when the drugs have to be used for extended periods of time (months), such as for fungal infections in immunocompromised patients. We have therefore focused our efforts in identifying the toxicity pathways for individual drug classes, such as aminoglycosides, and addressed these issues at the very outset. Since aminoglycoside-induced hair cell loss in explants is similar to that in humans, we will first use mouse organ culture for a secondary screening of the top compounds without toxicity. We will then use pigmented guinea pigs to evaluate auditory function by measurement of auditory brainstem responses, count loss of sensory hair cell loss, and assess renal function with serum for the top compounds. The results of this project will help us identify novel aminoglycosides with high efficacy against microbes of interest, but with reduced toxicity. The work proposed here, a multidisciplinary effort using rapid methods of synthesis, inhibition, and ototoxicity assays, will be further developed in this Phase II application using in vivo efficacy and ototoxicity studies using guinea pig models. We propose using novel aminoglycoside modifications, patented NUBAD assays, mouse organ culture studies, guinea pigs, to identify conjugates that show reduced ototoxicities, opening possibilities for developing drugs that can target resistant pathogens, but with much improved therapeutic indices.

Public Health Relevance Statement:
The work proposed here, a multidisciplinary effort to improve the therapeutic index of a well-established class of drugs-the aminoglycosides. We propose to reduce their ototoxicity, while simultaneously improving the anti- infective effects. In vitro and in vivo ototoxicity studies will be used to optimize the development of a new class of small molecules developed by NUBAD as non-toxic therapeutics. The success of the proposed work would be a significant addition to currently available classes of aminoglycosides in broad spectrum drug development. Using our preliminary data, we propose using our promising leads to develop and optimize a small library of small molecules that can be employed to inhibit microbial growth but with significantly lower ototoxicities, opening possibilities for development of therapeutics with improved therapeutic profiles over existing clinical standard of care drugs. The proposed research describes such a strategy for improving the therapeutic index of aminoglycosides by designing novel structures that lower their ototoxicities.

Project Terms:
absorption; Affect; Aminoglycosides; inhibitor; Anti-Infective Drugs; Anti-Infectives; Anti-infective Preparation; AntiInfective Drugs; AntiInfectives; Antiinfective Agents; communicable disease control agent; Anti-Infective Agents; Antibiotic Agents; Antibiotic Drugs; Miscellaneous Antibiotic; Antibiotics; Aminoglycoside Agents; Aminoglycoside Drugs; Aminoglycoside Antibiotics; Antifungal Drug; Therapeutic Fungicides; anti-fungal; anti-fungal agents; anti-fungal drug; antifungals; Antifungal Agents; Bacteria; Bacterial Infections; bacteria infection; bacterial disease; Biological Assay; Assay; Bioassay; Biologic Assays; Biological Availability; Bioavailability; Physiologic Availability; Biology; Candida; Monilia; Candidiasis; Candidosis; Moniliasis; Cell Death; necrocytosis; Cell Wall; Cells; Cell Body; Chemistry; Cochlea; Cochlear Organ; Containment; Creativeness; creativity; Disease; Disorder; Drug toxicity; Pharmaceutical Preparations; Drugs; Medication; Pharmaceutic Preparations; drug/agent; Equilibrium; balance; balance function; Feedback; Growth; Generalized Growth; Tissue Growth; ontogeny; Hair Cells; Corti Cell; ear hair cell; Health; Human; Modern Man; In Vitro; Incidence; Infection; Labyrinth; Internal Ear; inner ear; Lead; Pb element; heavy metal Pb; heavy metal lead; Lethal Dose 50; LD-50; LD50; Libraries; Lipids; Mechanoreceptors; Metabolism; Intermediary Metabolism; Metabolic Processes; Methods; Liver Microsomes; Mus; Mice; Mice Mammals; Murine; Mycoses; Fungus Diseases; fungal infection; fungus infection; United States National Institutes of Health; NIH; National Institutes of Health; Organ Culture Techniques; Organ Culture; in vitro Organ Culturing; in vitro vertebrate organ culturing; Legal patent; Patents; Patients; Peptide Hydrolases; Esteroproteases; Peptidases; Protease Gene; Proteases; Proteinases; Proteolytic Enzymes; Drug Kinetics; Pharmacokinetics; Pseudomonas; Chrysemonas; Flavimonas; Quality of life; QOL; Natural regeneration; Regeneration; regenerate; Research; Role; social role; Signal Transduction; Cell Communication and Signaling; Cell Signaling; Intracellular Communication and Signaling; Signal Transduction Systems; Signaling; biological signal transduction; sound; South Carolina; Testing; Time; Tobramycin; Tobrex; Tuberculosis; M tuberculosis infection; M. tb infection; M. tuberculosis infection; M.tb infection; M.tuberculosis infection; MTB infection; Mycobacterium tuberculosis (MTB) infection; Mycobacterium tuberculosis infection; TB infection; disseminated TB; disseminated tuberculosis; infection due to Mycobacterium tuberculosis; tuberculosis infection; tuberculous spondyloarthropathy; Universities; Work; Generations; Microbial Biofilms; biofilm; Immunocompromised; Immunocompromised Patient; Immunosuppressed Host; immunosuppressed patient; Immunocompromised Host; Health Costs; Healthcare Costs; Health Care Costs; Auditory Brainstem Responses; Guinea Pigs; Guinea Pigs Mammals; Cavia; Bacteria resistance; Bacteria resistant; Bacterial resistant; resistance to Bacteria; resistance to Bacterial; resistant to Bacteria; resistant to Bacterial; bacterial resistance; bases; base; method development; Organ; improved; Apical; Acute; Solid; Clinical; Phase; biologic; Biological; Medical; Series; Hospital Infections; Hospital acquired infection; institutional infection; Nosocomial Infections; excretion; Excretory function; Blood Serum; Serum; Sensory Hair; disability; kidney function; Renal function; drug induced hearing impairment; drug induced hearing loss; ototoxic; ototoxicity; Individual; Measurement; Antibacterial Agents; anti-bacterial; antibacterial; Anti-Bacterial Agents; Therapeutic; Metabolic; Knowledge; Minimum Inhibitory Concentration measurement; Minimum Inhibitory Concentrations; Auditory; Event; Clinic; Protocols documentation; Protocol; Risk-Benefit Assessment; interest; preference; success; small molecule libraries; chemical library; synergism; microbial; nephrotoxicity; Nephrotoxic; kidney toxicity; Toxic effect; Toxicities; Structure; Therapeutic Index; novel; economic cost; Drug Interactions; Pharmacodynamics; Modeling; drug development; rapid technique; rapid method; Fungal Drug Resistance; Antifungal Drug Resistance; Antifungal Drug Resistant; Antifungal resistant; Fungus drug resistant; anti-fungal drug resistance; anti-fungal drug resistant; anti-fungal resistance; anti-fungal resistant; antifungal resistance; fungus drug resistance; resistance to anti-fungal; resistance to antifungal; resistant to anti-fungal; resistant to antifungal; RNA bound; RNA Binding; preventing; prevent; small molecule; hearing impairment; Hearing Loss; Hypoacuses; Hypoacusis; dysfunctional hearing; hearing defect; hearing deficit; hearing difficulty; hearing disability; hearing dysfunction; Address; Dose; Data; Detection; National Institute of Allergy and Infectious Disease; NIAID; in vivo; Pathologic; Modification; follow-up; Active Follow-up; active followup; follow up; followed up; followup; Development; developmental; Pathway interactions; pathway; pre-clinical; preclinical; cost; designing; design; Biodistribution; Resistant profile; Resistance profile; Prevention therapy; pathogen; CF patients; individuals with CF; individuals with cystic fibrosis; patients with CF; patients with cystic fibrosis; cystic fibrosis patients; Population; innovate; innovative; innovation; resistant; Resistance; Microbe; multidisciplinary; new drug treatments; new drugs; new pharmacological therapeutic; new therapeutics; new therapy; next generation therapeutics; novel drug treatments; novel drugs; novel pharmaco-therapeutic; novel pharmacological therapeutic; novel therapy; novel therapeutics; murine model; mouse model; aminoglycoside ototoxicity; aminoglycoside-induced ototoxicity; TB therapy; TB treatment; tuberculosis therapy; tuberculosis treatment; therapeutic agent development; therapeutic development; combat; new therapeutic approach; new therapeutic intervention; new therapeutic strategies; new therapy approaches; new treatment approach; new treatment strategy; novel therapeutic approach; novel therapeutic strategies; novel therapy approach; novel therapeutic intervention; standard of care; pre-clinical toxicity; preclinical toxicity; candidate identification; screenings; screening; efficacy study; screening program; acute infection; side effect; Rapid screening; guinea pig model; mechanical stimulus; pre-Investigational New Drug meeting; Pre IND FDA meeting; Pre-IND mtg; pre-IND consultation; pre-IND discussion; pre-IND meeting