SBIR-STTR Award

Rapid NGS Method for Mapping of the Epitranscriptome
Award last edited on: 2/4/2024

Sponsored Program
SBIR
Awarding Agency
NIH : NHGRI
Total Award Amount
$1,366,974
Award Phase
2
Solicitation Topic Code
172
Principal Investigator
Gudrun Stengel

Company Information

Alida Biosciences Inc

11425 Sorrento Valley Road
San Diego, CA 92129
   (720) 375-1071
   info@alidabio.com
   www.alidabio.com
Location: Single
Congr. District: 50
County: San Diego

Phase I

Contract Number: 1R43HG012534-01
Start Date: 6/13/2022    Completed: 12/12/2022
Phase I year
2022
Phase I Amount
$259,529
Epitranscriptomics is the study of RNA modifications, which include more than 170 naturally occurring chemicalalternations to the nucleotides. More than 60 are found in human RNA of all types: mRNA, tRNA, rRNA, lncRNA, and the others. These modifications are dynamic; their global quantities change in development and during disease progression. They are installed by writer enzymes, read by reader proteins and removed by eraserenzymes, and they have an intrinsic capacity to alter RNA structure and dynamics. They influence translationinitiation and termination, translation fidelity, alternative splicing, trafficking between cellular compartments, andregulate RNA degradation. RNA reader, writer and eraser proteins are promising drug targets of high currentinterest to pharma. In this project, we will test and validate a new approach to detecting, identifying, and mappingRNA modifications in a multiplex and with high sensitivity-suitable for clinical samples (e.g. needle biopsies,FFPE samples) in which only sub-nanogram quantities of RNA may be available. This technology will besignificant because it will provide the first commercial method for profiling and correlating changes of multipleRNA modification types across the entire transcriptome using low sample input.

Public Health Relevance Statement:
Project Narrative Alida Biosciences is a start-up company focused on reading the epitranscriptomic code, a regulatory layer of biological information controlling how the genetic code is used in cells in health and in disease progression. By creating and commercializing the first methods for reading multiple elements of this epitranscriptomic code simultaneously, we will enable new science to understand the progression of diseases such as cancer and accelerate drug development targeting epitranscriptomic pathways.

Project Terms:

Phase II

Contract Number: 2R44HG012534-02
Start Date: 6/13/2022    Completed: 5/31/2025
Phase II year
2023
Phase II Amount
$1,107,445
Epitranscritomics is the study of RNA modifications, which include more than 170 naturally occurring chemicalalternations to the nucleotides. More than 60 are found in human RNA of all types: mRNA, tRNA, rRNA, lncRNA,and the others. These modifications are dynamic; their global quantities change in development and duringdisease progression. They are installed by writer enzymes, read by reader proteins and removed by eraserenzymes, and they have an intrinsic capacity to alter RNA structure and dynamics. They influence translationinitiation and termination, translation fidelity, alternative splicing, trafficking between cellular compartments, andregulate RNA degradation. RNA reader, writer and eraser proteins are promising drug targets of high currentinterest to pharma. In this project, we will develop and commercialize a new approach to detecting, identifying,and mapping, RNA modifications in a multiplex and with high sensitivity-suitable for clinical samples (e.g.needle biopsies, FFPE samples) in which only sub-nanogram quantities of RNA may be available. Thistechnology will be significant because it will provide the first commercial method for profiling and correlatingchanges of multiple RNA modification types across the entire transcriptome using low sample input.

Public Health Relevance Statement:
Project Narrative Alida Biosciences is a start-up company focused on reading the epitranscriptomic code, a regulatory layer of biological information controlling how the genetic code is used in cells in health and in disease progression. By creating and commercializing the first platform for reading multiple elements of this epitranscriptomic code simultaneously, we will enable new science to understand the progression of diseases such as cancer and accelerate drug development targeting epitranscriptomic pathways.

Project Terms:
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