SBIR-STTR Award

Precision methylation biomarkers for cervical cancer prevention in low resource settings in Latin America
Award last edited on: 2/17/2024

Sponsored Program
SBIR
Awarding Agency
NIH : NCI
Total Award Amount
$2,399,998
Award Phase
2
Solicitation Topic Code
394
Principal Investigator
Rafael Guerrero-Preston

Company Information

Lifegene-Biomarks Inc

1612 Avenida Ponce De Leon
San Juan, PR 00912
   (787) 993-1905
   N/A
   www.lifegenedna.com
Location: Single
Congr. District: 00
County: San Juan

Phase I

Contract Number: 1R44CA254690-01A1
Start Date: 9/15/2021    Completed: 5/31/2022
Phase I year
2021
Phase I Amount
$399,998
No woman should die from cervical cancer. We have the technical, medical and policy tools and approaches to eliminate it. Yet, one woman dies of cervical cancer every two minutes. Cervical cancer is the third leading malignancy among women in the world, after breast and colorectal cancer. Cervical cancer is also one of the tumors in which the most glaring disparities exist worldwide. The dramatic disparity in incidence rates between high- and low-income countries is due primarily to differential access to effective screening and pre- cancer, or preventive, treatment; similar disparities also exist within countries. Recently published hysterectomy-corrected cervical cancer mortality rates in the United States reveal a larger racial disparity in black women, that previously calculated and shows that the oldest black women have the highest cervical cancer mortality rates. Nonetheless, more than 80 percent of cases and 88 percent of deaths occur in Low and Middle Income Countries (LMICs). The World Health Organization (WHO) has developed guidelines for treatment of cervical intraepithelial neoplasia 2-3 and screen-and-treat strategies to prevent cervical cancer. In countries where multiple barriers exist for cytology based cervical cancer screening, a variety of alternative algorithms are being used, which include low-cost oncogenic HPV testing, visual inspection with acetic acid, and self-collected vaginal swabs. HPV testing is an excellent alternative to cytology for cervical cancer screening. However, HPV tests identifies women at risk for cervical cancer, but not those HPV-positive women who are most likely to have, or to develop in the near future, significant disease requiring treatment. Current practice is to triage these women by further testing with cytology and colposcopy-driven biopsies in developed countries and excision or ablation therapy in LMICs. The use of DNA biomarkers can reduce the number of women referred to colposcopy while maintaining adequate sensitivity and specificity. In this Fast Track SBIR project, we propose to demonstrate the feasibility for the commercialization of a precision methylation test, the CervicalMethDx Test, to stratify HPV+ patients for high risk of cervical cancer, as a reflex test to existing standard of care in LMICs. Our test will enable identification of HPV+ women at clinical risk for advancement from low-grade squamous intraepithelial lesions (LSIL) to Cervical Intraepithelial Neoplasia grade 3 (CIN3). In LMICs, where cervical cytology based-screening will not be implemented, optional modalities of our test will be developed in future projects to stratify HPV+ women at high risk of cervical cancer in self-collected vaginal swabs and/or urine samples. We are partnering with David Sidransky's research laboratory to optimize the CervicalMethDx Test and with the ESTAMPA Study (NCT01881659) Consortium to introduce precision epigenetic services to residents of Honduras, Colombia, Argentina and Paraguay. Efficient triage of HPV+ women will decrease unnecessary treatment, improve health care quality, decrease health care costs, and reduce cervical cancer mortality disparities in LMICs.

Public Health Relevance Statement:
Narrative The goal of this project is to demonstrate the feasibility for the commercialization of the CervicalMethDX Test, a precision methylation test to stratify HPV positive women for high risk of cervical cancer. Cervical cancer, a largely preventable disease, is one of the most common cancers found in women living in low- and middle- income countries (LMICs). A highly sensitive and specific test that can distinguish which HPV positive women with cervical lesions will progress to cancer, will transform cervical cancer screening practices world-wide.

Project Terms:
Acetic Acids; Acids; Age; ages; Algorithms; Argentina; Baltimore; Biological Assay; Assay; Bioassay; Biologic Assays; Biopsy; malignant breast neoplasm; Breast Cancer; malignant breast tumor; Malignant Neoplasms; Cancers; Malignant Tumor; malignancy; neoplasm/cancer; Malignant neoplasm of cervix uteri; Cervical Cancer; Cervix Cancer; Malignant Cervical Neoplasm; Malignant Cervical Tumor; Malignant Neoplasm of the Cervix; Malignant Tumor of the Cervix; Malignant Tumor of the Cervix Uteri; Malignant Uterine Cervix Neoplasm; Malignant Uterine Cervix Tumor; Uterine Cervix Cancer; Colombia; Colposcopy; Communities; Cytology; Cessation of life; Death; Disease; Disorder; DNA; Deoxyribonucleic Acid; Future; Genotype; Goals; Health; Health Promotion; Salutogenesis; promoting health; Honduras; Hysterectomy; Incidence; Human Papillomavirus; HPV; Human Papilloma Virus; Infectious Human Wart Virus; wart virus; Laboratories; Laboratory Research; Latin America; Methylation; mortality; Paraguay; Legal patent; Patents; Patients; Prospective Studies; Public Health; Publishing; Puerto Rico; health care quality; healthcare quality; Reflex action; Reflex; Resources; Research Resources; Retrospective Studies; Risk; Sensitivity and Specificity; Specificity; Technology; Testing; Time; Triage; United States; Universities; Urine; Urine Urinary System; Vagina; Vaginal; Woman; World Health Organization; Pap smear; Pap Test; Pap screening; Papanicolaou Smear; Papanicolaou Test; Health Care Costs; Health Costs; Healthcare Costs; Blinded; DNA Sequence; base; improved; Cervical; Site; Clinical; Phase; Medical; Cervical Intraepithelial Neoplasia; Cervical Intraepithelial Neoplasms; Cervix Intraepithelial Neoplasia; Cervix Uteri Intraepithelial Neoplasia; Uterine Cervix Intraepithelial Neoplasia; Evaluation; Lesion; Epithelial; Visual; Licensing; Policies; High Risk Woman; women at high risk; Glare; Cervical Cancer Screening; cervical cancer early detection; cervical cancer prevention; Intellectual Property; Developed Countries; Industrialized Countries; Industrialized Nations; developed country; developed nation; developed nations; Cervical Carcinoma; Cervix Uteri Carcinoma; Uterine Cervix Carcinoma; Cervix carcinoma; fluid; liquid; Liquid substance; Squamous Cell Intraepithelial Neoplasia; Squamous intraepithelial lesion; tool; HPV infection; Human papillomavirus infection; Human papilloma virus infection; instrument; Area Under Curve; programs; Clinic; Protocol; Protocols documentation; Country; Viral; Ablation; Services; Performance; cohort; Modality; Abscission; Extirpation; Removal; Surgical Removal; resection; Excision; Sampling; performance tests; Genomics; Swab; preventing; prevent; intraepithelial; Predictive Value; Epigenetic Process; Epigenetic; Epigenetic Change; Epigenetic Mechanism; Small Business Innovation Research Grant; SBIR; Small Business Innovation Research; Validation; Colorectal Cancer; Colo-rectal Cancer; HPV-High Risk; High Risk Oncogenic HPV; High risk HPV; High risk Human Papillomavirus; High risk Human papilloma virus; cost; Oncogenic; commercialization; tumor; high risk; FDA approved; standard of care; Biological Markers; bio-markers; biologic marker; biomarker; clinical risk; screening; methylation biomarker; methylation marker; racial disparity; disparities in race; race disparity; methylation testing; biomarker development; low and middle-income countries; LMIC; unnecessary treatment; Chilean; Preventive treatment; Preventative treatment; mortality disparity; disparities in mortality; low income country; recruit; treatment guidelines; phase 1 testing; phase 1 evaluation; phase I evaluation; phase I testing; feasibility testing; black women; black female

Phase II

Contract Number: 4R44CA254690-02
Start Date: 9/15/2021    Completed: 5/31/2024
Phase II year
2022
(last award dollars: 2023)
Phase II Amount
$2,000,000

No woman should die from cervical cancer. We have the technical, medical and policy tools and approaches to eliminate it. Yet, one woman dies of cervical cancer every two minutes. Cervical cancer is the third leading malignancy among women in the world, after breast and colorectal cancer. Cervical cancer is also one of the tumors in which the most glaring disparities exist worldwide. The dramatic disparity in incidence rates between high- and low-income countries is due primarily to differential access to effective screening and pre- cancer, or preventive, treatment; similar disparities also exist within countries. Recently published hysterectomy-corrected cervical cancer mortality rates in the United States reveal a larger racial disparity in black women, that previously calculated and shows that the oldest black women have the highest cervical cancer mortality rates. Nonetheless, more than 80 percent of cases and 88 percent of deaths occur in Low and Middle Income Countries (LMICs). The World Health Organization (WHO) has developed guidelines for treatment of cervical intraepithelial neoplasia 2-3 and screen-and-treat strategies to prevent cervical cancer. In countries where multiple barriers exist for cytology based cervical cancer screening, a variety of alternative algorithms are being used, which include low-cost oncogenic HPV testing, visual inspection with acetic acid, and self-collected vaginal swabs. HPV testing is an excellent alternative to cytology for cervical cancer screening. However, HPV tests identifies women at risk for cervical cancer, but not those HPV-positive women who are most likely to have, or to develop in the near future, significant disease requiring treatment. Current practice is to triage these women by further testing with cytology and colposcopy-driven biopsies in developed countries and excision or ablation therapy in LMICs. The use of DNA biomarkers can reduce the number of women referred to colposcopy while maintaining adequate sensitivity and specificity. In this Fast Track SBIR project, we propose to demonstrate the feasibility for the commercialization of a precision methylation test, the CervicalMethDx Test, to stratify HPV+ patients for high risk of cervical cancer, as a reflex test to existing standard of care in LMICs. Our test will enable identification of HPV+ women at clinical risk for advancement from low-grade squamous intraepithelial lesions (LSIL) to Cervical Intraepithelial Neoplasia grade 3 (CIN3). In LMICs, where cervical cytology based-screening will not be implemented, optional modalities of our test will be developed in future projects to stratify HPV+ women at high risk of cervical cancer in self-collected vaginal swabs and/or urine samples. We are partnering with David Sidransky's research laboratory to optimize the CervicalMethDx Test and with the ESTAMPA Study (NCT01881659) Consortium to introduce precision epigenetic services to residents of Honduras, Colombia, Argentina and Paraguay. Efficient triage of HPV+ women will decrease unnecessary treatment, improve health care quality, decrease health care costs, and reduce cervical cancer mortality disparities in LMICs.

Public Health Relevance Statement:
Narrative The goal of this project is to demonstrate the feasibility for the commercialization of the CervicalMethDX Test, a precision methylation test to stratify HPV positive women for high risk of cervical cancer. Cervical cancer, a largely preventable disease, is one of the most common cancers found in women living in low- and middle- income countries (LMICs). A highly sensitive and specific test that can distinguish which HPV positive women with cervical lesions will progress to cancer, will transform cervical cancer screening practices world-wide.

Project Terms:
Acetic Acids; Acids; Age; ages; Algorithms; Argentina; Baltimore; Biological Assay; Assay; Bioassay; Biologic Assays; Biopsy; malignant breast neoplasm; Breast Cancer; malignant breast tumor; Malignant Neoplasms; Cancers; Malignant Tumor; malignancy; neoplasm/cancer; Malignant neoplasm of cervix uteri; Cervical Cancer; Cervix Cancer; Malignant Cervical Neoplasm; Malignant Cervical Tumor; Malignant Neoplasm of the Cervix; Malignant Tumor of the Cervix; Malignant Tumor of the Cervix Uteri; Malignant Uterine Cervix Neoplasm; Malignant Uterine Cervix Tumor; Uterine Cervix Cancer; Colombia; Colposcopy; Communities; Cytology; Cessation of life; Death; Disease; Disorder; DNA; Deoxyribonucleic Acid; Future; Genotype; Goals; Health; Health Promotion; Salutogenesis; promoting health; Honduras; Hysterectomy; Incidence; Human Papillomavirus; HPV; Human Papilloma Virus; Infectious Human Wart Virus; wart virus; Laboratories; Laboratory Research; Latin America; Methylation; mortality; Paraguay; Patents; Legal patent; Patients; Prospective Studies; Public Health; Publishing; Puerto Rico; healthcare quality; health care quality; Reflex; Reflex action; Retrospective Studies; Risk; Sensitivity and Specificity; Specificity; Technology; Testing; Time; Triage; United States; Universities; Urine; Urine Urinary System; Vagina; Vaginal; Woman; World Health Organization; Pap smear; Pap Test; Pap screening; Papanicolaou Smear; Papanicolaou Test; Health Care Costs; Health Costs; Healthcare Costs; Blinded; DNA Sequence; base; improved; Cervical; Site; Clinical; Phase; Medical; Cervical Intraepithelial Neoplasms; Cervix Intraepithelial Neoplasia; Cervix Uteri Intraepithelial Neoplasia; Uterine Cervix Intraepithelial Neoplasia; Cervical Intraepithelial Neoplasia; Evaluation; Lesion; Epithelial; Visual; Licensing; Policies; women at high risk; High Risk Woman; Glare; cervical cancer early detection; Cervical Cancer Screening; cervical cancer prevention; Intellectual Property; Industrialized Countries; Industrialized Nations; developed country; developed nation; developed nations; Developed Countries; Cervical Carcinoma; Cervix Uteri Carcinoma; Uterine Cervix Carcinoma; Cervix carcinoma; fluid; liquid; Liquid substance; Squamous Cell Intraepithelial Neoplasia; Squamous intraepithelial lesion; tool; HPV infection; Human papillomavirus infection; Human papilloma virus infection; instrument; Area Under Curve; programs; Clinic; Protocol; Protocols documentation; Country; Viral; Ablation; Services; Performance; cohort; Modality; Abscission; Extirpation; Removal; Surgical Removal; resection; Excision; Sampling; performance tests; Genomics; Swab; preventing; prevent; intraepithelial; Predictive Value; Epigenetic Process; Epigenetic; Epigenetic Change; Epigenetic Mechanism; Small Business Innovation Research Grant; SBIR; Small Business Innovation Research; Validation; Colorectal Cancer; Colo-rectal Cancer; HPV-High Risk; High Risk Oncogenic HPV; High risk HPV; High risk Human Papillomavirus; High risk Human papilloma virus; cost; Oncogenic; commercialization; tumor; high risk; FDA approved; standard of care; Biological Markers; bio-markers; biologic marker; biomarker; clinical risk; screening; methylation biomarker; methylation marker; racial disparity; disparities in race; race disparity; racial inequality; racial inequity; racially unequal; methylation testing; biomarker development; low and middle-income countries; LMIC; unnecessary treatment; Chilean; Preventive treatment; Preventative treatment; mortality disparity; disparities in mortality; low income country; recruit; treatment guidelines; phase 1 testing; phase 1 evaluation; phase I evaluation; phase I testing; feasibility testing; black women; black female; Resource-limited setting; Low-resource area; Low-resource community; Low-resource environment; Low-resource region; Low-resource setting; Resource-constrained area; Resource-constrained community; Resource-constrained environment; Resource-constrained region; Resource-constrained setting; Resource-limited area; Resource-limited community; Resource-limited environment; Resource-limited region; Resource-poor area; Resource-poor community; Resource-poor environment; Resource-poor region; Resource-poor setting