SBIR-STTR Award

Plug-and-Play HLA for Safer and Personalized Off-the-Shelf Cell Therapies using big-DNA technology
Award last edited on: 5/19/2022

Sponsored Program
SBIR
Awarding Agency
NIH : NIAID
Total Award Amount
$600,000
Award Phase
2
Solicitation Topic Code
855
Principal Investigator
David Minh Truong

Company Information

Neochromosome Inc

192 Broad Leaf Court
Chapel Hill, NC 27517
Location: Single
Congr. District: 04
County: Orange

Phase I

Contract Number: 1R43AI148008-01A1
Start Date: 5/2/2020    Completed: 4/30/2022
Phase I year
2020
Phase I Amount
$300,000
Cellular therapies hold great promise for combating previously intractable diseases (e.g., cancer, organ failure, neuropathy, etc.). While autologous (patient-derived) cells generally are optimal, this route remains limited for many applications, cost-prohibitive, and burdensome. Allogeneic (donor-derived) pluripotent stem cells (PSCs), which can be differentiated to any cell type, provide greater scalability and cost savings. However, allogeneic cells are limited by the need to match HLA Class-1 alleles, the most genetically polymorphic region in humans. Mismatches in HLA Class 1 haplotypes lead to the "self vs non-self" immune response that can result in rejection of transplanted therapeutic cells. In this Phase I SBIR proposal, we will address this unmet need by developing a technology to program any HLA haplotype into a PSC on-demand. Our "immune-matching" technology will provide isogenic PSCs compatible with any individual, especially those with rare HLA haplotypes under-served by PSC "banks". Such engineered cells can be centrally manufactured into any differentiated cell type (eg, neurons, muscle, etc). Before differentiation, the PSC can also be modified with additional genetic safeguards and efficacy enhancing features beyond just HLA Class 1 genes, thus reducing time and effort. We will establish proof-of-concept of this technology during this Phase 1 SBIR with the following goals: (1) Using gene editing, we will generate a blank human PSC line devoid of HLA-1 proteins, capable of accepting a new HLA-1 haplotype; (2) We will reconfigure and synthesize HLA Class 1 as a single linked 115-kb locus, with modular assembly features for inputting any patient haplotype on-demand; (3) We will demonstrate integration of our 115-kb donor HLA Class 1 locus into our blank stem cell line, while preserving the native regulatory information and expression levels of the HLA Class 1 genes. Once developed, our technology will provide personalized stem cells for both immunotherapy and regenerative medicine applications, leading to more efficacious and safer cell-based treatments. We anticipate licensing our technology to other companies as a cost-effective resource for allogeneic cell therapies.

Public Health Relevance Statement:
Neochromosome Inc, Confidential  PROJECT NARRATIVE    We will develop technology to make off-­the-­shelf stem cells compatible with the immune system of any patient,  especially underserved patients with rare immune determinants, as a source to make any adult cell-­type suitable  for numerous applications in immunotherapy and regenerative medicine. 

Project Terms:
Address; Adult; Alleles; Allogenic; Antibody Activation; Antigen-Presenting Cells; Antigens; Autologous; B-Lymphocytes; Bacteria; base; cell bank; Cell Differentiation process; Cell Line; Cell Therapy; cell type; Cells; Chromosomes; Clinical Trials; combat; commercialization; Communicable Diseases; cost; cost effective; Cost Savings; Custom; cytokine; Dangerousness; Dendritic Cells; design; Disease; Disease Reservoirs; DNA; Engineering; Ensure; experience; Fingerprint; Gene Expression; Genes; Genetic; Genetic Polymorphism; genome sequencing; genomic locus; Genotype; Goals; Graft Rejection; Haplotypes; Heart failure; HLA-A gene; Human; human pluripotent stem cell; Immune; Immune response; Immune system; Immunologic Surveillance; Immunotherapy; Individual; induced pluripotent stem cell; Infection; Insulin-Dependent Diabetes Mellitus; Interferon Type II; Japan; Karyotype determination procedure; Lead; Letters; Licensing; Link; Macular degeneration; Malignant Neoplasms; Measures; Muscle; Neurons; Neuropathy; Oncogenic; Organ failure; Parkinson Disease; Patients; Peptides; Pharmaceutical Preparations; Phase; Play; Pluripotent Stem Cells; Population; preclinical trial; preservation; Process; Production; programs; Proteins; Protocols documentation; Quantitative Reverse Transcriptase PCR; Regenerative Medicine; Resources; Route; Safety; Small Business Innovation Research Grant; Somatic Cell; Source; Standardization; stem cells; Surface; T-Cell Receptor; T-Lymphocyte; Technology; Therapeutic; Time; transcription factor; Vaccines; Validation; Virus

Phase II

Contract Number: 5R43AI148008-02
Start Date: 5/2/2020    Completed: 4/30/2022
Phase II year
2021
Phase II Amount
$300,000
Neochromosome Inc, ConfidentialCellular therapies hold great promise for combating previously intractable diseases (e.g., cancer, organ failure,neuropathy, etc.). While autologous (patient-derived) cells generally are optimal, this route remains limited formany applications, cost-prohibitive, and burdensome. Allogeneic (donor-derived) pluripotent stem cells (PSCs),which can be differentiated to any cell type, provide greater scalability and cost savings. However, allogeneiccells are limited by the need to match HLA Class-1 alleles, the most genetically polymorphic region in humans.Mismatches in HLA Class 1 haplotypes lead to the "self vs non-self" immune response that can result inrejection of transplanted therapeutic cells. In this Phase I SBIR proposal, we will address this unmet need bydeveloping a technology to program any HLA haplotype into a PSC on-demand. Our "immune-matching"technology will provide isogenic PSCs compatible with any individual, especially those with rare HLAhaplotypes under-served by PSC "banks". Such engineered cells can be centrally manufactured into anydifferentiated cell type (eg, neurons, muscle, etc). Before differentiation, the PSC can also be modified withadditional genetic safeguards and efficacy enhancing features beyond just HLA Class 1 genes, thus reducingtime and effort. We will establish proof-of-concept of this technology during this Phase 1 SBIR with thefollowing goals: (1) Using gene editing, we will generate a blank human PSC line devoid of HLA-1 proteins,capable of accepting a new HLA-1 haplotype; (2) We will reconfigure and synthesize HLA Class 1 as a singlelinked 115-kb locus, with modular assembly features for inputting any patient haplotype on-demand; (3) We willdemonstrate integration of our 115-kb donor HLA Class 1 locus into our blank stem cell line, while preservingthe native regulatory information and expression levels of the HLA Class 1 genes. Once developed, ourtechnology will provide personalized stem cells for both immunotherapy and regenerative medicineapplications, leading to more efficacious and safer cell-based treatments. We anticipate licensing ourtechnology to other companies as a cost-effective resource for allogeneic cell therapies.

Public Health Relevance Statement:
Neochromosome Inc, Confidential  PROJECT NARRATIVE    We will develop technology to make off-­the-­shelf stem cells compatible with the immune system of any patient,  especially underserved patients with rare immune determinants, as a source to make any adult cell-­type suitable  for numerous applications in immunotherapy and regenerative medicine. 

Project Terms:
<21+ years old>
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