SBIR-STTR Award

Mimicking Synuclein Toxicity in Plant Cells to Identify Novel Neuroprotective Leads
Award last edited on: 5/22/2023

Sponsored Program
SBIR
Awarding Agency
NIH : NINDS
Total Award Amount
$2,090,511
Award Phase
2
Solicitation Topic Code
853
Principal Investigator
John M Littleton

Company Information

Naprogenix Inc

Uk-Astecc 145 Graham Avenue
Lexington, KY 40508
   (859) 257-1127
   info@naprogenix.com
   www.naprogenix.com
Location: Single
Congr. District: 06
County: Fayette

Phase I

Contract Number: 1R43NS108804-01
Start Date: 9/1/2018    Completed: 8/31/2019
Phase I year
2018
Phase I Amount
$231,474
Alpha-synuclein (ASYN) is believed to play an important role in the pathology of several neurodegenerative conditions, including some forms of Parkinson's disease, Dementia with Lewy Bodies, and Multiple Systems Atrophy. The most recent hypothesis is that the ASYN proteins (particularly genetic variants such as A53T that are prone to misfolding) are cleaved by the lysosomal enzyme, asparagine endopeptidase (AEP), to generate peptides that promote ASYN aggregation and initiate programmed cell death (PCD) in vulnerable neurons [Zhang et al 2017]. Inhibition of AEP, and of ASYN aggregation, are therefore prime molecular targets for pharmacotherapy of these “synucleinopathies” [see Brundin et al 2017], and maybe other neurodegenerative diseases. Chemical synthesis has yielded few leads, and this proposal will use a novel plant biotech platform to generate active compounds. In this approach, plant root cells are transformed by expression of human neuronal proteins to make them susceptible to a specific mechanism of neuronal toxicity. Mutants of these transgenic plant cells are then selected for survival when exposed to this neurotoxic mechanism. This mutagenesis and survival selection “evolves” plant secondary metabolism toward biosynthesis of metabolites that inhibit the neurotoxic mechanism. Proof of concept used expression of the human dopamine transporter (hDAT) in plant cells. This makes the plant cells highly susceptible to cytotoxicity induced by the dopaminergic neurotoxin, MPP+, which is accumulated by the hDAT. When transgenic (hDAT) mutants are selected for survival in MPP+ the resulting sub-population includes many individuals that overproduce known or novel metabolites that inhibit the hDAT, and/or the cytotoxic mechanisms of MPP+ [Brown et al, 2017]. As regards the AEP/ASYN mechanism of neurotoxicity, plant cells naturally contain a homolog to lysosomal AEP, which, like the human neuronal AEP, is linked to PCD [Hatsugai et al, 2015]. Metabolites that regulate this process almost certainly exist in plants, and so mutant plant cells that survive AEP activation should include many that overproduce natural inhibitors of plant (p)AEP. Because plant and human (h)AEP are homologs, these metabolites are potential neuroprotective leads. However, plant cells do not naturally contain homologs of human (h)ASYN so, to mimic the proposed mechanism of synucleinopathies we will create transgenic plant cells that express the hASYN variant A53T. Because pAEP has similar substrate specificity to hAEP, and because the peptides produced by hASYN-A53T cleavage are highly cytotoxic, these transgenic (hASYN- A53T) plant cells should show increased susceptibility to PCD when pAEP is activated (to be established in Phase I). Consequently transgenic (hASYN-A53T) mutants that survive AEP activation should include many individual clones in which inhibitors of pAEP, or of peptide-induced hASYN aggregation, are over-produced. In addition to “natural” metabolites, mutation and selection should “evolve” plant secondary metabolism toward novel metabolites with greater inhibitory activity. This will be established in Phase II using conventional in vitro screens, identifying active metabolites by assay-guided fractionation. The objective is to develop these active plant metabolites as therapeutic agents, or leads for synthetic modification, by the applicants in partnership with a major pharmaceutical company. The application of the proprietary biotechnology to these important targets will also strengthen its commercial importance as a plant drug discovery platform.

Public Health Relevance Statement:
Project narrative Several human neurodegenerative diseases, including familial Parkinson’s disease, share a mechanism in which the enzymatic modification and subsequent aggregation of a nerve cell protein called alpha-synuclein kills nerve cells. Plant root cells contain a similar enzyme, but they do not contain alpha-synuclein. By creating plant cells expressing human alpha-synuclein the applicants will be able to seek novel plant metabolites that inhibit this neurotoxic process and that will lead to novel drugs to treat these devastating neurodegenerative diseases.

Project Terms:
1-Methyl-4-phenylpyridinium; Abscisic Acid; aged; Agrobacterium; alpha synuclein; Anabolism; Apoptosis; Asparagine; asparaginylendopeptidase; Biological Assay; Biotechnology; Cell Culture Techniques; cell transformation; Cells; chemical synthesis; Chemicals; Cleaved cell; Complementary DNA; cytotoxic; cytotoxicity; Disease Progression; dopamine transporter; dopaminergic neuron; drug discovery; Endopeptidases; Enzymes; Exposure to; Fractionation; gain of function; gain of function mutation; genetic variant; Homologous Gene; Human; Immunoblotting; In Vitro; Inclusion Bodies; Individual; inhibitor/antagonist; Lead; Letters; Lewy Body Dementia; Link; Lobelia; Mediating; Metabolism; Methods; Modeling; Modification; molecular drug target; Multiple System Atrophy; Mutagenesis; mutant; Mutation; Nerve Degeneration; Neurodegenerative Disorders; Neurons; neurotoxic; neurotoxicity; Neurotoxins; novel; novel therapeutics; Parkinson Disease; Parkinson's Dementia; Pathologic; Pathology; Peptides; Pharmacologic Substance; Pharmacotherapy; Phase; phase 2 study; Plant Growth Regulators; Plant Roots; Plants; Play; Population; Predisposition; Procedures; Process; Production; Proteins; RNA; Role; screening; Substrate Specificity; synuclein; synucleinopathy; Testing; Therapeutic; Therapeutic Agents; Toxic effect; Transgenic Organisms; Transgenic Plants; Universities; Variant

Phase II

Contract Number: 2R44NS108804-02
Start Date: 9/1/2018    Completed: 8/31/2023
Phase II year
2020
(last award dollars: 2022)
Phase II Amount
$1,859,037

A general mechanism for neurodegeneration, including Parkinson's disease and Alzheimer's dementia, is the breakdown and subsequent aggregation of misfolded neuronal proteins. In the “synucleinopathies” for example neurotoxicity is associated with the cleavage of mis-folded alpha-synuclein (ASYN), probably mainly by asparagine endopeptidase (AEP) [Zhang et al 2017]. This generates neurotoxic peptides that then aggregate with ASYN in lysosomes, forming the Lewy inclusion bodies associated with neurodegeneration. A very similar mechanism exists in plant cells in which plant AEP breaks down misfolded proteins to produce vacuolar aggregates associated with programmed cell death (PCD) [Hatsugai et al, 2015]. However, plants do not contain ASYN, so, in order to mimic ASYN toxicity, plant cells were transformed to express the misfolding- prone A53T variant of human ASYN (phase I). Thymoquinone was then used to trigger plant PCD [Hassanien et al 2013] and the plant cells expressing ASYN-A53T were shown to be significantly more susceptible to this toxicity than controls. In phase II a mutant population of these transgenic (ASYN) plant cells will be selected for survival under this procedure. This is an example of “target-directed evolution” in which mutants that survive selection should “evolve” toward increased biosynthesis of metabolites that inhibit AEP and/or ASYN toxicity. Individual mutant plant cell clones with ASYN-protective activity will be identified by screening extracts of resistant cultures, and micro-analytical methods [Kelley et al, 2019] will then be used to identify active metabolites as leads. Lobelia cardinalis cell cultures were used in phase I because we had previously transformed these with the human dopamine transporter gene to mimic MPP+-induced dopaminergic neurotoxicity [Brown et al 2016]. In phase II we will also use the medicinal plant, Polygonum multiflorum, which contains a stilbene that inhibits ASYN toxicity [Zhang et al 2018]. Phase II aims to identify novel leads that engage the AEP and ASYN targets, and to test the most promising of these in cellular and animal models of synucleinopathy. Leads will be developed with the University of Kentucky Parkinson's Disease Research Center and a pharmaceutical partner. Identification of leads that engage these targets will also support target- directed evolution in mutant plant cells as a commercial platform for drug discovery.

Public Health Relevance Statement:
Project narrative Several human neurodegenerative diseases, including familial Parkinson's disease, share a mechanism in which the enzymatic modification and subsequent aggregation of a nerve cell protein called alpha-synuclein kills nerve cells. Plant root cells contain a similar enzyme, but they do not contain alpha-synuclein. By creating plant cells expressing human alpha-synuclein the applicants will be able to seek novel plant metabolites that inhibit this neurotoxic process, and that will lead to novel drugs to treat these devastating neurodegenerative diseases.

Project Terms:
1-Methyl-4-phenylpyridinium; aged; Agrobacterium; alpha synuclein; Alzheimer's Disease; Anabolism; analytical method; Animal Model; Apoptosis; Asparagine; asparaginylendopeptidase; base; Biotechnology; Cell Culture Techniques; Cell model; Cells; Chemicals; Cleaved cell; Clone Cells; commercialization; Complementary DNA; cytotoxic; Development; Directed Molecular Evolution; dopamine transporter; drug discovery; Endopeptidases; Enzymes; expectation; Exposure to; Foundations; gain of function mutation; Genes; Human; In Vitro; Inclusion Bodies; Individual; inhibitor/antagonist; Kentucky; Lead; Lobelia; Lysosomes; Materials Testing; Mediating; Medicinal Plants; Methods; misfolded protein; Modification; Molecular; Mutagenesis; mutant; Nerve Degeneration; Neurodegenerative Disorders; Neurons; neurotoxic; neurotoxicity; Neurotoxins; novel; novel therapeutics; Parkinson Disease; Pathologic; Peptide Hydrolases; Peptides; Pharmacologic Substance; Phase; Plant Roots; Plants; Polygonum; Population; Procedures; Process; programs; Proteins; Research; Resistance; Risk; screening; Stilbenes; Substance Use Disorder; synuclein; synucleinopathy; Technology Transfer; Testing; Therapeutic; Toxic effect; Transgenic Organisms; United States National Institutes of Health; Universities; Variant