Simultaneous recording and stimulation of larger populations of neurons distributed throughout the brain is needed to rigorously evaluate theories of neural computation at the cellular level in mammals. Previously, we introduced close-packed silicon probes (Scholvin et al., 2016) and a direct-to-disk data acquisition architecture (Kinney et al., 2015) to enable 1000-channel neural recording in head-fixed animals (Preliminary Data). Through pilot studies we demonstrated the successful recording of terabytes of neural spiking activity (Preliminary Data), but also discovered some shortcomings of the architecture. Two design elements in particular were limiting. First, our headstages were too bulky for freely-moving experiments. Second, our acquisition hardware did not have the ability to quickly analyze all 1000 channels of data. As a result, it took days to weeks to understand the neural activity content of the terabyte-size recordings. For ultra-high-channel count neural recordings to become routine, the acquisition architecture must allow and facilitate rapid online and offline analysis of large amounts of data. A computer architecture with local data storage and analysis is favored, since a 1000-channel recording (e.g. 1000 channels sampled with 16 bits at 30 kHz) generates neural data at a sustained rate that exceed typical (gigabit ethernet) network connection speed to compute clusters or the cloud. Accordingly, we propose a 1000-channel silicon probe for freely-moving electrophysiology experiments in combination with a data acquisition system optimized for easy data analysis. "The novel silicon probe will record and stimulate 1000 closed-packed sites, be compact enough for freely-moving rodent experiments, and reduce headstage cost by a factor of 10, down to $1 per channel. Furthermore, the re-designed acquisition hardware will not only capture 1000 channels of neural data and store to solid-state drive over a high-speed bus, but will now also copy the data to a GPU for spike sorting and RAM for visualization both online and offline. To test the system, we will perform 1000-channel freely-moving neural recordings in rodents, in collaboration with (at least) 3 labs with expertise (see letters of support).
Public Health Relevance Statement: PROJECT NARRATIVE Electrophysiological recording systems allow direct observation of neural activity in animal subjects. This facilitates the study of crucial neuroscientific topics such as development, learning and memory, and cognition, as well as brain diseases such as Alzheimer's, epilepsy, Parkinson's, and depression. LeafLabs' tools for performing and analyzing high-channel count electrophysiology experiments in freely-moving rodents will allow researchers to collect and interpret neural data at a large scale.
Project Terms: senile dementia of the Alzheimer type; primary degenerative dementia; dementia of the Alzheimer type; Primary Senile Degenerative Dementia; Alzheimers disease; Alzheimers Dementia; Alzheimer's; Alzheimer syndrome; Alzheimer sclerosis; Alzheimer disease; Alzheimer Type Dementia; Alzheimer; Alzheimer's Disease; Animals; Engineering / Architecture; Architecture; Encephalon; Brain Nervous System; Brain; Intracranial Central Nervous System Disorders; Intracranial CNS Disorders; Encephalon Diseases; Brain Disorders; Brain Diseases; Cognition; Computer Architectures; data interpretation; Data Analysis; Data Analyses; depression; Mental Depression; electrophysiological; Neurophysiology / Electrophysiology; Electrophysiology; Electrophysiology (science); Elements; epileptogenic; epileptiform; epilepsia; Seizure Disorder; Epileptics; Epileptic Seizures; Epilepsy; Goals; Head; Learning; Mammals; Mammalia; Memory; Neurons; neuronal; Neurocyte; Neural Cell; Nerve Unit; Nerve Cells; Neurosciences; Parkinson Disease; Primary Parkinsonism; Parkinsons disease; Parkinson's disease; Parkinson's; Parkinson; Paralysis Agitans; Pilot Projects; pilot study; Research Personnel; Researchers; Investigators; Rodent; Rodents Mammals; Rodentia; Silicon; Si element; Computer software; Software; Technology; Testing; Time; Visualization; Imagery; base; Site; Chronic; data storage; data retrieval; Data Storage and Retrieval; Collaborations; Letters; tool; Stream; System; Performance; solid state; relating to nervous system; neural; Speed; novel; Devices; Sorting - Cell Movement; sorting; Sampling; theories; Willow; Salix; computerized data processing; data processing; Data; in vivo; Preparation; developmental; Development; cost; distributed computing; datagrid; data grid; cluster computing; designing; design; Population; data acquisition; terabyte; experimental study; experimental research; experiment
