SBIR-STTR Award

An HXYZ-g HR-Fast-MAS Probe for Dramatically Improved Biomolecular Structure Determinations
Award last edited on: 5/15/2020

Sponsored Program
SBIR
Awarding Agency
NIH : NIGMS
Total Award Amount
$2,924,888
Award Phase
2
Solicitation Topic Code
-----

Principal Investigator
Francis David Doty

Company Information

Doty Scientific Inc

700 Clemson Road
Columbia, SC 29223
   (803) 788-6497
   info@dotynmr.com
   www.dotynmr.com
Location: Single
Congr. District: 02
County: Richland

Phase I

Contract Number: 1R43GM117905-01
Start Date: 3/1/2016    Completed: 11/30/2016
Phase I year
2016
Phase I Amount
$224,326
?A Quad-Fast-MAS probe for Dramatically Improved Biomolecular Structure Determinations Abstract The last 15 years have seen steady progress in applying magic angle spinning (MAS) NMR to an increasingly wide range of applications in structural biology. However, the methods are all far from routine and often require 10-80 mg of a concentrated sample that is extremely difficult to isolate and prepare suitably. The "Holy Grail" i solids NMR would be the ability to successfully utilize the powerful suite of NMR acquisition and automated structure determination protocols developed for solution NMR, which rely mostly on 1H-detected triple- and quad-resonance schemes (as such generally permit 8 or 30 times higher S/N than direct detection, for 13C and 15N respectively) with solid samples of 1-10 mg. Four-channel multinuclear probes with gradients have been the workhorse in solution NMR for decades, but quad-resonance solids probes have not been available - they have been perceived to be impractically difficult to design and build. This proposal seeks funding to develop, build, and test a prototype H/X/Y/Z HR-fast-MAS probe based on a novel "single-coil" rf circuit optimized for 1H detection and suitable for use at fields from 7-30 T and rotor diameters from 0.5-5 mm. The Phase-II probe will be compatible with automated sample exchange, pulsed-field gradients (PFG), and sample temperatures from 90 K to 400 K. Moreover, it will be essentially devoid of background signals for all the primary nuclides (1H, 31P, 13C, 2H, 15N, and 17O). Order-of-magnitude improvements in spectral resolution have been demonstrated for 1H-detected methods in solids from the combination of improved sample perdeuteration, optimal protonation of exchangeable sites, faster spinning, and higher polarizing fields, seeing typical 1H linewidths in rigid proteins decrease from ~0.4 ppm to ~0.04 ppm. Analysis suggests that a substantial portion of the remaining broadening is from J-couplings to the deuterons (which is not averaged by MAS) and spinner-dependent effects - thermal gradients, axial vibration, and magnetism. Calculations suggest 2H J-couplings contribute 5- 10 Hz to 1H line broadening, and available data suggest the probe-limited resolution in commercially available fast-MAS probes has contributed another 6-25 Hz. A 4-channel HR-MAS probe that permits simultaneous decoupling of 13C, 2H, and 15N, achieves >40 kHz MAS rotation with order-of-magnitude lower thermal gradients, and is capable of 2 Hz resolution on liquids 1H resolution, is expected to enable 1H linewidths below 0.01 ppm on most of the residues in rigid proteins at 900 MHz and above. The novel circuit will also be tunable to virtually all combinations of interest, such as 1H/13C/2H/15N, 1H/31P/13C/2H, 1H/31P/7Li/13C, 1H/27Al/29Si/17O, and 1H/13C/29Si/103Rh, thereby making it also invaluable in such areas as metabolism, neurology, materials science, catalysis, and sustainable energy.

Public Health Relevance Statement:


Public Health Relevance:
A Quad-Fast-MAS probe for Dramatically Improved Biomolecular Structure Determinations Narrative Thousands of researchers are regularly using Nuclear Magnetic Resonance (NMR) techniques, with a majority of the applications driven by the need for structure and function determination in biological macromolecules. The advances developed under this project will allow every NMR laboratory that has a wide- bore magnet to apply their liquids methods to solids - on a budget they will be able to afford, equipping biomedical researchers with superb new tools for the structure-function studies of membrane proteins, cellular membrane systems, and numerous other areas.

Project Terms:
abstracting; Area; base; Biological; Biomedical Research; Budgets; Caliber; Catalysis; Cellular Membrane; Data; Databases; Deposition; design; Detection; deuteron; Evaluation; Funding; improved; interest; Laboratories; Liquid substance; macromolecule; Magic; Magnetism; materials science; Membrane Proteins; Metabolism; Methods; Modeling; NBL1 gene; Neurology; novel; Nuclear Magnetic Resonance; Performance; Phase; Physiologic pulse; protein structure; Proteins; Protocols documentation; protonation; prototype; public health relevance; Publishing; Research Personnel; Resolution; Rotation; Sampling; Scheme; Signal Transduction; simulation; Site; Solid; solid state nuclear magnetic resonance; Solutions; Speed (motion); structural biology; Structure; Surface; System; Techniques; Temperature; Testing; Time; tool; Validation; vibration

Phase II

Contract Number: 2R44GM117905-02
Start Date: 00/00/00    Completed: 00/00/00
Phase II year
2017
(last award dollars: 2019)
Phase II Amount
$2,700,562

An HXYZ-g HR-Fast-MAS probe for Dramatically Improved Biomolecular Structure Determinations Abstract. Liquid state NMR spectroscopy is arguably one of the best tools for structure determination for soluble proteins. The method provides atomic resolution for modest molecular weight proteins and/or their complexes. The method begins to have difficulty when the molecular weight of the system causes slow molecular motion, which in turn increases the linewidth beyond the point of useful resolution. Solid state NMR (ssNMR) methods have progressed remarkably over the past 15 years to permit improved resolution for these conditions, but they still come well short of the goal of liquid-like resolution on biological macromolecules, such as membrane proteins and the fibrils that are central to Alzheimer’s Disease. The “Holy Grail” in ssNMR would be the ability to successfully utilize the powerful suite of NMR acquisition and automated structure determination protocols developed for solution NMR, which rely on ¹H-detected triple- and quad-resonance ²H-decoupled schemes (as such generally permit 8 or 30 times higher S/N than direct detection, for ¹³C and¹?5N respectively) with solid samples of 1-10 mg. The main objective of this Phase II application is to complete the development a four-channel multinuclear ssNMR probe (HXYZ) that has the capability of providing ¹³C/¹?N/¹H correlations under ²H decoupling utilizing modest (15 kHz) to fast (> 35 kHz) Magic Angle Spinning (MAS) while detecting ¹H. The resulting resolution, particularly with proposed novel pulse sequences, will be close to that of a typical liquid state experiment on proteins. Four-channel multinuclear probes with gradients have been the workhorse in solution NMR for decades, but they have not been available for ssNMR – they have been perceived to be impractically difficult to design and build. The Phase-I demonstrated feasibility of an H/X/Y/Z narrow-bore (NB) MAS probe based on a novel “single-coil” rf circuit optimized for ¹H detection and suitable for use at fields from 7-31 T. The Phase-II probe will be compatible with automated sample exchange, pulsed-field gradients (PFG), NB magnets, and novel NB microwave irradiation methods for Dynamic Nuclear Polarization (DNP). Calculations suggest ²H J-couplings contribute 5-10 Hz to the remaining ¹H line broadening in rigid proteins, and available data suggest the probe-limited resolution (from thermal gradients and magnetism) in commercially available fast-MAS probes has contributed another 6-25 Hz. A 4-channel MAS probe with order- of-magnitude lower thermal gradients that is capable of 2 Hz ¹H resolution on liquids is expected to enable ¹H linewidths below 0.01 ppm on most of the residues in rigid proteins at 900 MHz and above. The novel circuit will also be tunable to virtually all combinations of interest, such as ¹H/¹³C/²H/¹?N, ¹H/³¹P/¹³C/²H, ¹H/³¹P/?Li/¹³C, ¹H/²?Al/²?Si/¹?O, and ¹H/¹³C/²?Si/¹?³Rh, thereby making it also invaluable in such areas as metabolism, neurology, materials science, catalysis, and sustainable energy.

Public Health Relevance Statement:
An HXYZ-g HR-Fast-MAS probe for Dramatically Improved Biomolecular Structure Determinations Narrative. Thousands of researchers are regularly using Nuclear Magnetic Resonance (NMR) techniques, with a majority of the applications driven by the need for structure and function determination in biological macromolecules. The advances developed under this project will allow every NMR laboratory (independent of the magnet bore, be it either a narrow or wide bore in diameter) to apply their liquids methods to solids – on a budget they will be able to afford, equipping biomedical researchers with superb new tools for the structure- function studies of the fibrils central to Alzheimer’s Disease, membrane proteins, cellular membrane systems, and numerous other areas.

Project Terms:
Alzheimer's Disease; Amyloid Fibrils; Area; base; Biological; Biomedical Research; Budgets; Caliber; Catalysis; Cellular Membrane; Complex; COSY; Data; Databases; Deposition; design; Detection; Development; Diffusion; Equipment; experimental study; Funding; Goals; Health; improved; Inferior; innovation; insight; interest; irradiation; Laboratories; Liquid substance; macromolecule; Magic; Magnetism; materials science; Measurement; Membrane Proteins; Metabolism; Methods; microwave electromagnetic radiation; Modeling; Molecular; Molecular Weight; Motion; Neurology; next generation; NMR Spectroscopy; novel; Nuclear; Nuclear Magnetic Resonance; operation; Performance; Phase; Physiologic pulse; Platelet Factor 4; Price; protein structure; Proteins; Protocols documentation; Publishing; Research Personnel; Resolution; RF coil; Sampling; Scheme; Side; Solid; solid state nuclear magnetic resonance; Solvents; Sonication; Speed; structural biology; Structure; Surface; System; Techniques; Technology; Time; tool; vibration; virtual; Width