SBIR-STTR Award

System for Automatic Classification of Rodent Vocalizations
Award last edited on: 11/11/19

Sponsored Program
SBIR
Awarding Agency
NIH : NIMH
Total Award Amount
$617,118
Award Phase
2
Solicitation Topic Code
-----

Principal Investigator
Garet Lahvis

Company Information

Biospeech Inc

4640 SW Macadam Avenue UNit 250
Portland, OR 97239
   (503) 341-1192
   vansanten@biospeech.com
   www.biospeech.com
Location: Single
Congr. District: 05
County: Clackamas

Phase I

Contract Number: 1R43MH101978-01A1
Start Date: 9/1/14    Completed: 8/31/16
Phase I year
2014
Phase I Amount
$324,277
Depression, dementia, schizophrenia, substance abuse, developmental disorders and speech- related disabilities can feature impairments in the ability to express emotions. Development of treatments for these impairments presents a formidable challenge. In this regard, several researchers who study rodent models of mental illness have more recently focused upon the frequency modulations associated with rodent ultrasonic vocalizations (USVs). Measures of USVs are an attractive behavioral phenotype because they model the prosodic deficits in existing mental disorders. A critical impasse for researchers is that USV extraction from background noise is difficult and time-consuming and the approaches used to classify these calls into categories remain arbitrary. Thus, most researchers report simple tallies of the numbers of USVs produced by their rodent models. We propose a software system that allows the user to efficiently and effectively interrogate rodent vocalization data for prosodic content. Our collaboration brings together an expert in mouse social behavior (Lahvis) with an expert in computational assessment of human prosody (van Santen). We propose to take advantage of two well-defined genetic strains of mouse sociability, the C57Bl/6 and BALB/c strains, which have been tested extensively for USVs under highly controlled social conditions. With audio recordings of these two strains of mice under conditions of social interaction, social solicitation, and social isolation, we will develop software that automatically segments, tracks, and classifies mouse USVs from acoustic recordings. This software will vastly improve researcher efficiency in academic and industry--based analysis of rodent vocalizations. It will improve routine USV assessments, from counts of call rates toward analyses of frequency modulations within each call. Further, our software will allow users to classify calls according to mathematical approaches, rather than the arbitrary currently used. This analytical capacity is not currently available despite broad demand for software with this function. The proposed software will provide researchers with a powerful new tool for determining how genetic and pharmacological manipulations moderate vocal patterns. It will have widespread value for application in academia and industry.

Thesaurus Terms:
Academia;Acoustics;Alleles;Animal Model;Animal Vocalization;Animals;Base;Behavior;Behavior Assessment;Behavior Change;Behavioral;Biology;Categories;Classification;Classification Scheme;Collaborations;Computational Algorithm;Computer Analysis;Computer Software;Computerized Tools;Data;Dementia;Developmental Disease/Disorder;Digital;Disability;Disease;Drug Discovery;Drug Of Abuse;Evaluation;Expressed Emotion;Face;Frequencies (Time Pattern);Genetic;Genetic Manipulation;Genetic Strain;Graphical User Interface;Growth;Health;Human;Impairment;Improved;Individual;Industry;Interest;Investments;Knock-Out;Label;Laboratories;Mathematical Methods;Measures;Mental Depression;Mental Disorders;Mental State;Methods;Modeling;Motivation;Mouse Strains;Mus;Neurologic;Neuropsychiatry;Noise;Outcome;Output;Pattern;Pharmacological Treatment;Phase;Phenotype;Preclinical Drug Evaluation;Production;Rat Strains;Reporting;Research Personnel;Research Study;Rodent;Rodent Model;Schizophrenia;Shapes;Small Molecule;Social;Social Behavior;Social Communication;Social Conditions;Social Interaction;Social Isolation;Software Development;Software Systems;Solutions;Speech;Speech Disorders;Substance Abuse Problem;Surveys;System;Testing;Therapy Development;Time;Time Interval;Tool;Training;Transgenic Model;Ultrasonics;Visual;Vocalization;Work;

Phase II

Contract Number: 5R43MH101978-02
Start Date: 9/1/14    Completed: 8/31/16
Phase II year
2015
Phase II Amount
$292,841
Depression, dementia, schizophrenia, substance abuse, developmental disorders and speech- related disabilities can feature impairments in the ability to express emotions. Development of treatments for these impairments presents a formidable challenge. In this regard, several researchers who study rodent models of mental illness have more recently focused upon the frequency modulations associated with rodent ultrasonic vocalizations (USVs). Measures of USVs are an attractive behavioral phenotype because they model the prosodic deficits in existing mental disorders. A critical impasse for researchers is that USV extraction from background noise is difficult and time-consuming and the approaches used to classify these calls into categories remain arbitrary. Thus, most researchers report simple tallies of the numbers of USVs produced by their rodent models. We propose a software system that allows the user to efficiently and effectively interrogate rodent vocalization data for prosodic content. Our collaboration brings together an expert in mouse social behavior (Lahvis) with an expert in computational assessment of human prosody (van Santen). We propose to take advantage of two well-defined genetic strains of mouse sociability, the C57Bl/6 and BALB/c strains, which have been tested extensively for USVs under highly controlled social conditions. With audio recordings of these two strains of mice under conditions of social interaction, social solicitation, and social isolation, we will develop software that automatically segments, tracks, and classifies mouse USVs from acoustic recordings. This software will vastly improve researcher efficiency in academic and industry--based analysis of rodent vocalizations. It will improve routine USV assessments, from counts of call rates toward analyses of frequency modulations within each call. Further, our software will allow users to classify calls according to mathematical approaches, rather than the arbitrary currently used. This analytical capacity is not currently available despite broad demand for software with this function. The proposed software will provide researchers with a powerful new tool for determining how genetic and pharmacological manipulations moderate vocal patterns. It will have widespread value for application in academia and industry.

Public Health Relevance Statement:


Public Health Relevance:
There is growing interest in and use of assessments of animal vocalizations to understand animal models of neuropsychiatric illness and speech disorders. Critically, the computational tools used to analyze these vocalizations are cumbersome and analyses of vocalizations often depend upon highly arbitrary classification schemes. Through a collaboration between an expert in rodent social behavior and an expert in computational assessments of human speech, we propose to develop software that automatically segments, tracks, and classifies mouse USVs from acoustic recordings or rodents, which will have widespread application for academia and industry.

NIH Spending Category:
Basic Behavioral and Social Science; Behavioral and Social Science; Bioengineering; Brain Disorders; Mental Health

Project Terms:
Academia; Acoustics; Alleles; Animal Model; Animal Vocalization; Animals; base; Behavior; Behavior assessment; behavior change; Behavioral; Biology; Categories; Classification; Classification Scheme; Collaborations; Computational algorithm; Computer Analysis; Computer software; computerized tools; Data; Dementia; developmental disease/disorder; digital; disability; Disease; drug discovery; drug of abuse; Evaluation; Expressed Emotion; Face; Frequencies (time pattern); Genetic; genetic manipulation; genetic strain; graphical user interface; Growth; habituation; Health; Human; Impairment; improved; Individual; Industry; interest; Investments; Knock-out; Label; Laboratories; mathematical methods; Measures; Mental Depression; Mental disorders; mental state; Methods; Modeling; Motivation; Mouse Strains; Mus; Neurologic; neuropsychiatry; Noise; Outcome; Output; Pattern; Pharmacological Treatment; Phase; Phenotype; Preclinical Drug Evaluation; Production; Rat Strains; Reporting; Research Personnel; research study; Rodent; Rodent Model; Schizophrenia; Shapes; small molecule; social; Social Behavior; social communication; Social Conditions; Social Interaction; Social isolation; software development; software systems; Solutions; Speech; Speech Disorders; Substance abuse problem; Surveys; System; Testing; therapy development; Time; time interval; tool; Training; Transgenic Model; Ultrasonics; Visual; vocalization; Work