SBIR-STTR Award

Optical Fluorescence and X-Ray Computed Tomography Scanner for Small Animal In-VI
Award last edited on: 4/12/16

Sponsored Program
SBIR
Awarding Agency
NIH : NCRR
Total Award Amount
$851,196
Award Phase
2
Solicitation Topic Code
-----

Principal Investigator
Seth D Shulman

Company Information

Bioscan Inc

4590 MacArthur Boulevard NW
Washington, DC 20007
   (202) 338-0974
   sales@bioscan.com
   www.bioscan.com
Location: Single
Congr. District: 00
County: District of Columbia

Phase I

Contract Number: 1R44RR030701-01
Start Date: 9/16/10    Completed: 3/15/11
Phase I year
2010
Phase I Amount
$102,651
The overall goal of this application is to develop a quantitative in-vivo small animal imaging system for fluorescent reporter probes that fuses fluorescence light emitting computed tomography (FLECT) with X- ray computed tomography (CT). The proposed dual-modality imaging system will not only provide a research tool for better understanding of biological function and processes on a cellular or molecular level in-vivo, but will also aid the development of new drug therapies and accelerate their translation into the clinic. Conventional imaging methods only provide two-dimensional (2D) fluorescence surface images and, hence, do not reveal the actual spatial location and concentration of the targeted reporter system. Furthermore, current fluorescence tomography (FT) systems are still in a developing stage and suffer from several limitations. First, these FT systems assume optically uniform tissue models that, consequently, prohibit the accurate quantification of the reporter probe's location and concentration. Second, neither planar fluorescence imaging nor FT provides any anatomical information. Hence, the reconstructed reporter probe location cannot be localized relative to the animal's anatomy. The proposed FLECT/CT system will overcome these limitations in two ways. First, we will leverage the anatomical information gained from CT with its high spatial resolution and assign optical properties to various segmented organs. These non-uniform optical property maps will in turn improve quantitative fluorescence image reconstruction leading to accurate images about the reporter probe's actual spatial location and concentration. Second, structural images from CT will provide the anatomical information that is necessary for co-locating the fluorescent reporter probe to the animal's anatomy. In Phase 1, we will perform numerical simulations and tissue phantom experiments that will provide a proof of principle for the proposed FLECT/CT system. We will demonstrate that (1) applying non-uniform optical property maps to FLECT reconstructions makes quantitative tomographic imaging of reporter probes feasible and (2) spatial maps of organs with largely varying optical properties can be segmented from CT images. In Phase 2, a commercial grade FLECT/CT system will be developed where the optical and X-ray components share the same rotating gantry. We will develop fully automated image segmentation methods and different techniques for assigning optical parameters to segmented organs. The optical parameters will be determined by (1) optical tomography in a reduced parameter space, (2) from known (oxy-)hemoglobin concentrations in different tissue types, or from (3) optical parameter databases of prior experiments. Last, the performance of the FLECT/CT system will be evaluated in small animal imaging experiments. Once completed, our FLECT/CT system will provide a powerful tool for research of cancer, neurological pathologies, and cardiovascular disease. , ,

Public Health Relevance:
The proposed development of a combined fluorescence tomography and X-ray CT imaging system for small animals will reconstruct and display the three-dimensional in-vivo distribution of fluorescent reporter probes for studying molecular processes in a living biological system. The combination of fluorescence tomography with X-ray CT will significantly improve the image quality of fluorescence tomographic images and will co-register them to structural CT images showing the animal's anatomy. Therefore, the proposed imaging system would not only be of great significance for better understanding biological processes and pathological function in living small animals on a cellular and molecular level, but would also aid the development of new drug therapies and accelerate their translation into the clinic.

Thesaurus Terms:
2-Dimensional;Algorithms;Anatomic;Anatomic Models;Anatomical Sciences;Anatomy;Animal Model;Animal Models And Related Studies;Animals;Area;Biological Function;Biological Process;Biomedical Research;Body Tissues;Cat Scan, X-Ray;Cat Scanners, X-Ray;Cat Scan;Ct X Ray;Ct Scan;Cancers;Cardiovascular Diseases;Cell Function;Cell Process;Cell Physiology;Cellular Function;Cellular Physiology;Cellular Process;Clinic;Communities;Computed Tomography;Computer Programs;Computer Software;Computerized Axial Tomography (Computerized Tomography);Computerized Tomography, X-Ray;Crossmatching, Tissue;Data;Data Banks;Data Bases;Databank, Electronic;Databanks;Database, Electronic;Databases;Development;Drug Evaluation, Preclinical;Drug Screening;Drug Therapy;Emi Scan;Effectiveness;Electromagnetic, Laser;Evaluation Studies, Drug, Pre-Clinical;Evaluation Studies, Drug, Preclinical;Fluorescence;Fuzzy Logic;Goals;Hemoglobin;Histocompatibility Testing;Image;Image Reconstructions;Imaging Phantoms;Instrumentation, Other;Lasers;Lead;Learning;Life;Light;Literature;Location;Malignant Neoplasms;Malignant Tumor;Mammals, Mice;Maps;Measurement;Methods;Methods And Techniques;Methods, Other;Mice;Models, Anatomic;Models, Anatomical;Molecular;Murine;Mus;Optical Tomography;Optics;Organ;Pb Element;Performance;Phantoms;Phantoms, Imaging;Pharmacotherapy;Phase;Photoradiation;Preclinical Drug Evaluation;Process;Property;Property, Loinc Axis 2;Radiation, Laser;Radiation, X-Rays;Radiation, X-Rays, Gamma-Rays;Relative;Relative (Related Person);Reporter;Research;Resolution;Roentgen Rays;Sbir;Sbirs (R43/44);Scanning;Science Of Anatomy;Small Animal Imaging Systems;Small Business Innovation Research;Small Business Innovation Research Grant;Software;Source;Staging;Subcellular Process;Surface;System;System, Loinc Axis 4;Techniques;Technology;Testing;Tissue Crossmatchings;Tissue Model;Tissue Typing;Tissues;Tomodensitometry;Tomography Scanners, X-Ray Computed;Tomography, Computed, Scanners;Tomography, Radiographic;Tomography, Transmission;Tomography, X-Ray;Tomography, Xray Computed;Translations;X-Radiation;X-Ray Computed Tomography;X-Ray Computed Tomography Scanners;X-Ray Tomography;X-Rays;Xray Tomography;Xrays;Zonography;Aerobic Respiration Control Protein;Anatomy;Anticancer Research;Arca Protein;Base;Biological Systems;Biomarker;Cancer Research;Cardiovascular Disorder;Catscan;Clinical Data Repository;Clinical Data Warehouse;Computed Axial Tomography;Computer Program/Software;Computerized Axial Tomography;Computerized Tomography;Data Repository;Design;Designing;Detector;Dye Protein;Experiment;Experimental Research;Experimental Study;Fluorescence Imaging;Heavy Metal Pb;Heavy Metal Lead;Histocompatibility Typing;Human Disease;Imaging;Imaging Segmentation;Imaging Modality;Improved;In Vivo;Instrumentation;Interest;Light Scattering;Malignancy;Model Organism;Mouse Model;Nano Particle;Nanoparticle;Neoplasm/Cancer;Neurological Pathology;Pre-Clinical;Preclinical;Prototype;Public Health Relevance;Reconstruction;Relational Database;Research Study;Simulation;Tissue Phantom;Tomography;Tool;Two-Dimensional

Phase II

Contract Number: 4R44RR030701-02
Start Date: 9/16/10    Completed: 7/31/13
Phase II year
2011
(last award dollars: 2012)
Phase II Amount
$748,545

The overall goal of this application is to develop a quantitative in-vivo small animal imaging system for fluorescent reporter probes that fuses fluorescence light emitting computed tomography (FLECT) with X- ray computed tomography (CT). The proposed dual-modality imaging system will not only provide a research tool for better understanding of biological function and processes on a cellular or molecular level in-vivo, but will also aid the development of new drug therapies and accelerate their translation into the clinic. Conventional imaging methods only provide two-dimensional (2D) fluorescence surface images and, hence, do not reveal the actual spatial location and concentration of the targeted reporter system. Furthermore, current fluorescence tomography (FT) systems are still in a developing stage and suffer from several limitations. First, these FT systems assume optically uniform tissue models that, consequently, prohibit the accurate quantification of the reporter probe's location and concentration. Second, neither planar fluorescence imaging nor FT provides any anatomical information. Hence, the reconstructed reporter probe location cannot be localized relative to the animal's anatomy. The proposed FLECT/CT system will overcome these limitations in two ways. First, we will leverage the anatomical information gained from CT with its high spatial resolution and assign optical properties to various segmented organs. These non-uniform optical property maps will in turn improve quantitative fluorescence image reconstruction leading to accurate images about the reporter probe's actual spatial location and concentration. Second, structural images from CT will provide the anatomical information that is necessary for co-locating the fluorescent reporter probe to the animal's anatomy. In Phase 1, we will perform numerical simulations and tissue phantom experiments that will provide a proof of principle for the proposed FLECT/CT system. We will demonstrate that (1) applying non-uniform optical property maps to FLECT reconstructions makes quantitative tomographic imaging of reporter probes feasible and (2) spatial maps of organs with largely varying optical properties can be segmented from CT images. In Phase 2, a commercial grade FLECT/CT system will be developed where the optical and X-ray components share the same rotating gantry. We will develop fully automated image segmentation methods and different techniques for assigning optical parameters to segmented organs. The optical parameters will be determined by (1) optical tomography in a reduced parameter space, (2) from known (oxy-)hemoglobin concentrations in different tissue types, or from (3) optical parameter databases of prior experiments. Last, the performance of the FLECT/CT system will be evaluated in small animal imaging experiments. Once completed, our FLECT/CT system will provide a powerful tool for research of cancer, neurological pathologies, and cardiovascular disease.

Public Health Relevance:
The proposed development of a combined fluorescence tomography and X-ray CT imaging system for small animals will reconstruct and display the three-dimensional in-vivo distribution of fluorescent reporter probes for studying molecular processes in a living biological system. The combination of fluorescence tomography with X-ray CT will significantly improve the image quality of fluorescence tomographic images and will co-register them to structural CT images showing the animal's anatomy. Therefore, the proposed imaging system would not only be of great significance for better understanding biological processes and pathological function in living small animals on a cellular and molecular level, but would also aid the development of new drug therapies and accelerate their translation into the clinic.

Thesaurus Terms:
2-Dimensional;Algorithms;Anatomic;Anatomic Models;Anatomical Models;Anatomical Sciences;Anatomy;Animal Model;Animal Models And Related Studies;Animals;Area;Biological Function;Biological Process;Biomedical Research;Body Tissues;Cat Scan;Ct X Ray;Ct Scan;Cancers;Cardiovascular Diseases;Cell Function;Cell Process;Cell Physiology;Cellular Function;Cellular Physiology;Cellular Process;Clinic;Communities;Computed Tomography;Computer Software;Computerized Axial Tomography (Computerized Tomography);Data;Data Banks;Data Bases;Databanks;Databases;Development;Drug Screening;Drug Therapy;Emi Scan;Effectiveness;Electronic Databank;Electronic Database;Evaluation Studies, Drug, Pre-Clinical;Evaluation Studies, Drug, Preclinical;Fluorescence;Fuzzy Logic;Goals;Hemoglobin;Histocompatibility Testing;Image;Image Reconstructions;Imaging Phantoms;Loinc Axis 2 Property;Loinc Axis 4 System;Laser Electromagnetic;Laser Radiation;Lasers;Lead;Learning;Life;Light;Literature;Location;Malignant Neoplasms;Malignant Tumor;Maps;Measurement;Methods;Mice;Mice Mammals;Molecular;Murine;Mus;Optical Tomography;Optics;Organ;Pb Element;Performance;Pharmacotherapy;Phase;Photoradiation;Preclinical Drug Evaluation;Process;Property;Radiation, X-Rays, Gamma-Rays;Radiographic Tomography;Relative;Relative (Related Person);Reporter;Research;Resolution;Roentgen Rays;Sbir;Sbirs (R43/44);Scanning;Small Animal Imaging Systems;Small Business Innovation Research;Small Business Innovation Research Grant;Software;Source;Staging;Subcellular Process;Surface;System;Techniques;Technology;Testing;Tissue Crossmatching;Tissue Model;Tissue Typing;Tissues;Tomodensitometry;Tomography, Computed, Scanners;Translations;Transmission Tomography;X-Radiation;X-Ray Cat Scan;X-Ray Cat Scanners;X-Ray Computed Tomography;X-Ray Computed Tomography Scanners;X-Ray Computerized Tomography;X-Ray Tomography;X-Rays;X-Rays Radiation;Xray Computed Tomography;Xray Tomography;Xrays;Zonography;Aerobic Respiration Control Protein;Anticancer Research;Arca Protein;Base;Biological Systems;Biomarker;Cancer Research;Cardiovascular Disorder;Catscan;Clinical Data Repository;Computed Axial Tomography;Computer Program/Software;Computerized Axial Tomography;Computerized Tomography;Data Repository;Design;Designing;Detector;Developmental;Dye Protein;Experiment;Experimental Research;Experimental Study;Fluorescence Imaging;Heavy Metal Pb;Heavy Metal Lead;Histocompatibility Typing;Human Disease;Imaging;Imaging Segmentation;Imaging Method;Imaging Modality;Improved;In Vivo;Instrumentation;Interest;Light Scattering;Malignancy;Model Organism;Mouse Model;Nano Particle;Nanoparticle;Neoplasm/Cancer;Neurological Pathology;Optical;Pre-Clinical;Preclinical;Prototype;Public Health Relevance;Reconstruction;Research Study;Simulation;Tissue Phantom;Tomography;Tool;Two-Dimensional